CDS

Accession Number TCMCG007C04961
gbkey CDS
Protein Id XP_009117278.1
Location complement(join(2031448..2031945,2032031..2032177,2032275..2032438,2032524..2032681,2032789..2033148,2033223..2033434,2033530..2034285,2034378..2035061,2035233..2035586))
Gene LOC103842338
GeneID 103842338
Organism Brassica rapa

Protein

Length 1110aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009119030.3
Definition probable E3 ubiquitin ligase SUD1 isoform X2 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category A
Description E3 ubiquitin ligase SUD1
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko04121        [VIEW IN KEGG]
KEGG_ko ko:K10661        [VIEW IN KEGG]
EC 2.3.2.27        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko04141        [VIEW IN KEGG]
map04141        [VIEW IN KEGG]
GOs GO:0000209        [VIEW IN EMBL-EBI]
GO:0001101        [VIEW IN EMBL-EBI]
GO:0002020        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004842        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005783        [VIEW IN EMBL-EBI]
GO:0005789        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006508        [VIEW IN EMBL-EBI]
GO:0006511        [VIEW IN EMBL-EBI]
GO:0006629        [VIEW IN EMBL-EBI]
GO:0006720        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008299        [VIEW IN EMBL-EBI]
GO:0008610        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009414        [VIEW IN EMBL-EBI]
GO:0009415        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009698        [VIEW IN EMBL-EBI]
GO:0009699        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010025        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010035        [VIEW IN EMBL-EBI]
GO:0010143        [VIEW IN EMBL-EBI]
GO:0010166        [VIEW IN EMBL-EBI]
GO:0010243        [VIEW IN EMBL-EBI]
GO:0010345        [VIEW IN EMBL-EBI]
GO:0010498        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016021        [VIEW IN EMBL-EBI]
GO:0016567        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019748        [VIEW IN EMBL-EBI]
GO:0019787        [VIEW IN EMBL-EBI]
GO:0019899        [VIEW IN EMBL-EBI]
GO:0019941        [VIEW IN EMBL-EBI]
GO:0030163        [VIEW IN EMBL-EBI]
GO:0030176        [VIEW IN EMBL-EBI]
GO:0030433        [VIEW IN EMBL-EBI]
GO:0031224        [VIEW IN EMBL-EBI]
GO:0031227        [VIEW IN EMBL-EBI]
GO:0031624        [VIEW IN EMBL-EBI]
GO:0031984        [VIEW IN EMBL-EBI]
GO:0032446        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034976        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0036503        [VIEW IN EMBL-EBI]
GO:0042175        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042335        [VIEW IN EMBL-EBI]
GO:0043085        [VIEW IN EMBL-EBI]
GO:0043161        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043632        [VIEW IN EMBL-EBI]
GO:0044093        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044255        [VIEW IN EMBL-EBI]
GO:0044257        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044390        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044425        [VIEW IN EMBL-EBI]
GO:0044432        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044550        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050790        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051341        [VIEW IN EMBL-EBI]
GO:0051353        [VIEW IN EMBL-EBI]
GO:0051603        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065009        [VIEW IN EMBL-EBI]
GO:0070647        [VIEW IN EMBL-EBI]
GO:0070936        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0098827        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:1900490        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901565        [VIEW IN EMBL-EBI]
GO:1901568        [VIEW IN EMBL-EBI]
GO:1901570        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1901698        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]
GO:1990381        [VIEW IN EMBL-EBI]
GO:2001215        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAGATTTCCTCTGCTGAATCCGAATCGCTATCCATCTCTGGCGGGGCGGCCGCTTCTTCCGAGGCCGCATCGGAATCGTCGGTATCTTCTCCCTCATCCTCCTCCCTCTCCGCTTCGAGCCAGGCCTCTCCCACCGCCTTCTCCGCCGTGGATCCCGCGTCTTTGACGGCTACAGCTTCCAGATACGTTGATGATGACGAAGACGAGGAGGACGTTTGCAGGATCTGCAGAAACCCGGGGGAAGCGGATAATCCGCTTCGGTACCCGTGCGCTTGCAGCGGGAGCATCAAGTTCGTGCATCAGGATTGCCTCCTTCAGTGGCTTAATCATAGCAACGCTCGTCAATGCGAGGTTTGTAAGCATCCGTTTTCGTTCTCACCAGTGTATGCTGAGAATGCTCCAACGAGGCTCCCTTTCCAGGAGTTTGTTGTTGGGATCGCGATGAAAGCTTGCCACGTGTTGCAGTTCTTTCTCCGGTTGAGTTTCGTGCTTTCCGTGTGGCTTCTCACCATTCCCTTTATTACGTTTTGGATTTGGCGGTTGGCTTTTGTGAGGAGCTTTGGGGAAGCTCAGAGGCTGTTCTTAAGCCACATCTCTACCACAGTGATTCTCACCGACTGTTTGCACGGGTTCTTGCTCTCGGCTAGCATTGTCTTCATTTTCCTCGGGGCGACTTCGTTGAGGGATTACTTTAGGCATTTGCGGGAGTTGGGAGGACAGGATGAGAGAGAAGATGAAGGGGAGAGGAACGGTGTTCGTGCTGCGAGGAGACCTGCTGGGCAGGGTAATAGGAACCTTGCTGGAGAGGGGAATGTTGAAGATGCTGGAGATCAGGGTGCTGGTGTTGGTCAGGTCAATAGAAGGAATCCTGAAAATGTTCTGGCGAGGTTGGATATACAAGCGGCTCGTCTCGAGGCTCAGGTTGAACAAATGTTTGATGGTTTGGATGACGCTGATGGTGCTGAAGATGTTCCGTTTGATGAGCTGGTTGGAATGCAGGGTCCGGTGTTTCATTTGGTTGAGAATGCCTTTACTGTTCTGGCAAGCAATATGATATTCCTTGGGGTTGTGATCTTTGTGCCCTTCACATTAGGACGGGTTATATTGTATCATCTGTCGTGGCTTTTTGCTGCTGCTAGAGGCCCTGCCCTGACCGCATCAATGCATTTTATAGATTCAGCGTTGGAAAATACAACTCTGAAGAGTGCGTTGACTTCTGTCTCAAATTTGACTAACGAGGGCCAAGAAAATGGACTGCTTGGTCAGCTCTCAGAGATGGTGAAAGTCAACGGAAGTGAACTGAACGGGGCAAACAGTACTCTATCTGTTGCTGCTGATCTCTTAAAAGGTTCTGTTACAGGTTCGTCTAAGCTATCTGATGTGACAACGCTGACTGTTGGGTACATGTTTATTGTATTGCTGGTGTTCCTTTACCTCGGAATCATTGCACTGATTCGTTATGCCAAGGGTGAGCCACTGACTGTTGGGAGATTTTATGGTATCGCTTCAATGGTAGAAGCCGTACCATCCCTCCTCAGACAGTTCTTGGCAGCAATGAGGCATCTGATGACTATGATCAAAGTTGCATTCCTTTTGGTCATCGAGCTTGGAGTCTTCCCGCTGATGTGTGGGTGGTGGCTAGATGTTTGCACGGTTAGGATGTTTGGTAAAACAATGTCTCACAGAGTACAGTTTCTATCAATTTCTCCACTGGCAAGCTCACTTGTTCACTGGGTTGTTGGAATCATGTACATGCTGCAGATAAGCATCTTCGTTAGCCTTCTTCGAGGGGTTCTTCGCCCTGGAGTCTTGTATTTCCTTCGTGATCCCGCAGATCCTAATTATAATCCATTCCGAGATTTGATTGATGATCCAGTACACAAGCATGCTCGGAGGGTTTTGTTATCTGTTGCAGTTTACGGTAGTTTGATTGTCATGCTGGTATTTTTACCAGTCAAGCTAGCTATCCGGATGGCTCCTTCAATCTTCCCGCTCGACATATCTGTATCCGACCCATTCACTGAGATTCCGGCCGACATGCTTCTGTTTCAAATATGCATACCATTTATCATCGAGCATTTCAGACTTCGGACCACAATCAAGTCCCTTCTACGCTGCTGGTTCACCGCCGTCGGTTGGGCCCTTGGTTTGACAGACTTCCTCTTACCAAGACCAGAGGACAACGTTGGTCAGGACAATGGAATTGGTGAACCAGGAAGGCAGAACAGAGCACAGGTCGGTGGACCTGACAGGGCCATAGCTGCGCTTCCAGCAGCTGATGACCCTAACAGAAATCTCCTCCGTGCTGATAATGTCAACGCCGGTGAGGAATATGAAGATGATGAAGAACAATCTGATACAGAGTACAACTTTGTGATCCGGATAATCCTTCTACTACTCTATGCATGGGTTACACTTCTTCTCTTCAATTCGGCATTAATAGTCGTACCAGTTTCTCTCGGACGTGCTCTGTTCAGTGCCATCCCAGTTCTCCCAATAACGCATGGCATCAAATGCAATGATTTGTATGCTTTCGTAATTGGCACATATGCCTTTTGGACTGCCATATCTGGGGGAAGGTATGCTATCGAGCATGTCAAGTCGAGGAGGACTTCAGTCTTGCTTAACCAAATATGGAAATGGTGTGGGATTGTCTTCAAGAGCTCGGTACTATTAGCCATATGGGTTTTTATCATTCCGGTACTAATCGGACTTCTGTTTGAGCTTTTGGTGATCGTCCCAATGAGAGTCCCAGTAGATGAAAGTCCTGTCTTCCTTCTGTATCAAGACTGGGCTCTTGGCCTCATCTTTTTGAAGATCTGGACTAGACTGGTAATGTTGGATCATATGCTTCCGATAATGGATGATAGCTGGAGAGCAAAGTTTGAGAGAGTAAGAGAAGATGGATTCTCGAGGCTTCAAGGTTTGTGGGTACTGAGAGAGATTGTATTCCCTATCGTGATGAAGCTTCTGACAGCATTATGCGTTCCCTACGTCCTGGCGAGAGGAGTGTTCCCGATGCTCGGCTATCCGCTAGTTGTGAACTCGGCGGTCTACAGATTCGCTTGGATAGGTTGTCTCTCGGTGAGCCTCTTCTGCTTTTGTGCAAAGAGATGCCATGTCTGGTTCAGAAACCTTCACAACTCCATCCGTGATGACCGTTATCTCATTGGTCGGAGGCTCCATAACTTTGGGGAAGCTGCCTTGGCTAACCAAAACTTAAACCAGAGCAGTGAAGATGCTGCAGGAGATGGTGGGGTCTTGATAGGACGTGAGGGAGATGCTGATACTGGACTTAGGCTCAGACGTGCTATCCAACAAGAAGCTTAG
Protein:  
MEISSAESESLSISGGAAASSEAASESSVSSPSSSSLSASSQASPTAFSAVDPASLTATASRYVDDDEDEEDVCRICRNPGEADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPVYAENAPTRLPFQEFVVGIAMKACHVLQFFLRLSFVLSVWLLTIPFITFWIWRLAFVRSFGEAQRLFLSHISTTVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQDEREDEGERNGVRAARRPAGQGNRNLAGEGNVEDAGDQGAGVGQVNRRNPENVLARLDIQAARLEAQVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFTLGRVILYHLSWLFAAARGPALTASMHFIDSALENTTLKSALTSVSNLTNEGQENGLLGQLSEMVKVNGSELNGANSTLSVAADLLKGSVTGSSKLSDVTTLTVGYMFIVLLVFLYLGIIALIRYAKGEPLTVGRFYGIASMVEAVPSLLRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTVRMFGKTMSHRVQFLSISPLASSLVHWVVGIMYMLQISIFVSLLRGVLRPGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAIRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFIIEHFRLRTTIKSLLRCWFTAVGWALGLTDFLLPRPEDNVGQDNGIGEPGRQNRAQVGGPDRAIAALPAADDPNRNLLRADNVNAGEEYEDDEEQSDTEYNFVIRIILLLLYAWVTLLLFNSALIVVPVSLGRALFSAIPVLPITHGIKCNDLYAFVIGTYAFWTAISGGRYAIEHVKSRRTSVLLNQIWKWCGIVFKSSVLLAIWVFIIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMLPIMDDSWRAKFERVREDGFSRLQGLWVLREIVFPIVMKLLTALCVPYVLARGVFPMLGYPLVVNSAVYRFAWIGCLSVSLFCFCAKRCHVWFRNLHNSIRDDRYLIGRRLHNFGEAALANQNLNQSSEDAAGDGGVLIGREGDADTGLRLRRAIQQEA